* Updated accuracy distance metric to accomodate condition-wise approaches (#1217)

Co-authored-by: ddcoggan <[email protected]>

* Add temporal metrics; add temporal versions of MajajHong2015 (#1109)

* feature: support temporal models for neural alignment by chaning TemporalIgnore to Temporal Aligned

* add example temporal submission

* complete new framework

* new module: temporal model helpers

* change the arch of temporal; add tutorials

* improve: better naming

* update: wrapper tutorial on brain model

* add feature: inferencer identifier tracked by extractor for result caching

* fix: video fps sampling; need more tests!

* fix bugs: video sampling based on fps was wrong.

* add mmaction2 models; add more features to the inferencers

* PR: temporal model helpers

* PR fix: not including gitmodules for now

* Update brainscore_vision/model_helpers/brain_transformation/temporal.py

Co-authored-by: Martin Schrimpf <[email protected]>

* Update brainscore_vision/model_helpers/brain_transformation/temporal.py

Co-authored-by: Martin Schrimpf <[email protected]>

* Update brainscore_vision/model_helpers/brain_transformation/temporal.py

Co-authored-by: Martin Schrimpf <[email protected]>

* Update brainscore_vision/models/temporal_models/test.py

Co-authored-by: Martin Schrimpf <[email protected]>

* add mae_st; add ding2012

* try new arch

* init ding2012

* add tests for temporal model helpers; add block inferencer

* Delete tests/test_model_helpers/temporal/test___init__.py

delete the old test

* add benchmark ding2012

* add mutliple libs for temporal models

* change executor output format; add more inference tests; init load_weight in s3

* add openstl

* update backend for executor

* feat:load_weight_file and corresponding test

* change:resize strategy changed from bilinear to pooling

* change:resize strategy changed from bilinear to pooling

* fix mae_st submission

* minor

* fix:dtype in assembly time align

* minor

* update model submissions

* fix dependency

* refactor: simplify the inferencer methods

* fix:block inferencer, neuroid coord while merging

* fix:inferencer identifier

* fix:weigh download

* change tests to have max_workers=1

* revert screen.py

* not submit region_layer_map

* remove torch dependency

* make fake modules in tests

* add torch to requirements; avoid torch in tests

* minor

* minor

* np.object changed to object

* remove return in tests

* fix insertion position bug

* Apply suggestions from code review

add: more type hints

Co-authored-by: Martin Schrimpf <[email protected]>

* add: more type hints and comments

* minor

* pr:only commit temporal model helpers

* pr: add one model for example

* undo whole_brain in Brainodel.RecordingTarget

* use logger and fix newlines

* fix: video fps with copy was wrong

* feat:fractional max_spatial_size

* downsample layers in VideoMAE

* fix:video sampling wrong duration

* add more tests

* fix merge

* fix merge

* module refactor; add more input test

* add more temporal models

* fix videomaev2 sha

* fix:temporal_modelmae_st

* change:video conservative loading; rename:image to pil image

* fix:video last frame sampling; fix_time_naming

* ignore pytest_cache

* re-trigger tests

* add joblib pool error management; fix video/image path recognizer

* update: naming of failed to pickle func in joblibmapper

* add temporal metric helpers

* add temporal version of mamjajhong2015

* Update benchmark.py

type hint

* Update benchmark.py

* Update brainscore_vision/metric_helpers/temporal.py

Co-authored-by: Martin Schrimpf <[email protected]>

* Update brainscore_vision/metrics/internal_consistency/__init__.py

Co-authored-by: Martin Schrimpf <[email protected]>

* Update benchmark.py

---------

Co-authored-by: Yingtian Tang <[email protected]>
Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: deirdre-k <[email protected]>
Co-authored-by: Michael Ferguson <[email protected]>

* Python 3.11 Migration (v2.1.0) (#1199)

* changes necessary for 3.11

* change references of 3.7 to 3.11, remove tf and keras

* fix geirhos data tests

* Normalize deprecated

* np.float is deprecated

* update w/ master (#1066)

* add r101_eBarlow_lmda_01_1 to models (#1037)

Co-authored-by: AutoJenkins <[email protected]>

* update hmax requirements.txt (#1053)

* update hmax requirements.txt to add torchvision (#1054)

* fix mobilenet `pooler` layer prefix (#1055)

* add r34_eMMCR_Mom_lmda_02_1 to models (#1061)

Co-authored-by: AutoJenkins <[email protected]>

* add r101_eBarlow_lmda_02_1_copy to models (#1059)

Co-authored-by: AutoJenkins <[email protected]>

* add r34_eMMCR_Mom_lmda_01_1 to models (#1060)

Co-authored-by: AutoJenkins <[email protected]>

* add r34_eMMCR_Mom_Vanilla_1 to models (#1063)

Co-authored-by: AutoJenkins <[email protected]>

* ignore time dimension in Bracci2019 (#1064)

---------

Co-authored-by: Katherine Fairchild <[email protected]>
Co-authored-by: AutoJenkins <[email protected]>
Co-authored-by: Michael Ferguson <[email protected]>
Co-authored-by: Martin Schrimpf <[email protected]>

* update (#1093)

* add r101_eBarlow_lmda_01_1 to models (#1037)

Co-authored-by: AutoJenkins <[email protected]>

* update hmax requirements.txt (#1053)

* update hmax requirements.txt to add torchvision (#1054)

* fix mobilenet `pooler` layer prefix (#1055)

* add r34_eMMCR_Mom_lmda_02_1 to models (#1061)

Co-authored-by: AutoJenkins <[email protected]>

* add r101_eBarlow_lmda_02_1_copy to models (#1059)

Co-authored-by: AutoJenkins <[email protected]>

* add r34_eMMCR_Mom_lmda_01_1 to models (#1060)

Co-authored-by: AutoJenkins <[email protected]>

* add r34_eMMCR_Mom_Vanilla_1 to models (#1063)

Co-authored-by: AutoJenkins <[email protected]>

* ignore time dimension in Bracci2019 (#1064)

* Update behavior.py (#742)

Co-authored-by: Sam Winebrake <[email protected]>
Co-authored-by: deirdre-k <[email protected]>

* add eBarlow_lmda_02_1_full to models (#1067)

Co-authored-by: AutoJenkins <[email protected]>

* oddoneout: build full stimulus id index for non-numeric ids (#1068)

* Add mobilevit_small - take 2 (#1051)

* Add mobilevit_small - take 2

* Update brainscore_vision/models/mobilevit_small/model.py

Co-authored-by: Martin Schrimpf <[email protected]>

---------

Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: Michael Ferguson <[email protected]>

* add yudixie_resnet18_240719_1 to models (#1070)

Co-authored-by: AutoJenkins <[email protected]>

* add yudixie_resnet18_240719_0 to models (#1069)

Co-authored-by: AutoJenkins <[email protected]>

* add yudixie_resnet18_240719_2 to models (#1071)

Co-authored-by: AutoJenkins <[email protected]>

* add yudixie_resnet18_240719_10 to models (#1079)

Co-authored-by: AutoJenkins <[email protected]>

---------

Co-authored-by: Katherine Fairchild <[email protected]>
Co-authored-by: AutoJenkins <[email protected]>
Co-authored-by: Michael Ferguson <[email protected]>
Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: Linus Sommer <[email protected]>
Co-authored-by: deirdre-k <[email protected]>
Co-authored-by: Kartik Pradeepan <[email protected]>

* remove keraswrapper

* remove brendel

* Trying a fix for travis

* add necessary imports

* Updating ubuntu version as xenial doesn't have 3.11

* Adding fix for pyproject.toml

* Pin numpy below 2.0

* pointing to test branch for travis

* update s3 bucket to brainscore-unittests

* update s3 bucket to brainscore-unittests (rajalingham2020)

* update s3 bucket to brainscore-unittests (sanghavi2020)

* update folder name of models to folder_name="models-to-integrate-for-2.0"

* update folder name of MAE model to folder_name="models-to-integrate-for-2.0"

* update folder name of MAEv2 to folder_name="models-to-integrate-for-2.0"

* update folder name of mae_st to folder_name="models-to-integrate-for-2.0"

* PredNet commented out in init

* remove prednet dead code

* remove prednet code

* scialom data: update image_id to stimulus_id

* add number_of_trials keyword to rajalingham2018

* pointing to branch

* Removing dash from python module name (#1118)

* Removing dash from module name (#1119)

* add require_variance keyword to precomputedfeatures call

* add s3 download if not present to test helper

* add missing s3 import

* Update test_helper.py

* pull item from ceiling

Need to check with martin if this will break anything

* update coggan benchmark to work w/ new pandas/python

* add identifier function to pre computed features

* forgot to add string line

* update rajalingham2018 deprecated test

* update w/ master (#1194)

* add r101_eBarlow_lmda_01_1 to models (#1037)

Co-authored-by: AutoJenkins <[email protected]>

* update hmax requirements.txt (#1053)

* update hmax requirements.txt to add torchvision (#1054)

* fix mobilenet `pooler` layer prefix (#1055)

* add r34_eMMCR_Mom_lmda_02_1 to models (#1061)

Co-authored-by: AutoJenkins <[email protected]>

* add r101_eBarlow_lmda_02_1_copy to models (#1059)

Co-authored-by: AutoJenkins <[email protected]>

* add r34_eMMCR_Mom_lmda_01_1 to models (#1060)

Co-authored-by: AutoJenkins <[email protected]>

* add r34_eMMCR_Mom_Vanilla_1 to models (#1063)

Co-authored-by: AutoJenkins <[email protected]>

* ignore time dimension in Bracci2019 (#1064)

* Update behavior.py (#742)

Co-authored-by: Sam Winebrake <[email protected]>
Co-authored-by: deirdre-k <[email protected]>

* add eBarlow_lmda_02_1_full to models (#1067)

Co-authored-by: AutoJenkins <[email protected]>

* oddoneout: build full stimulus id index for non-numeric ids (#1068)

* Add mobilevit_small - take 2 (#1051)

* Add mobilevit_small - take 2

* Update brainscore_vision/models/mobilevit_small/model.py

Co-authored-by: Martin Schrimpf <[email protected]>

---------

Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: Michael Ferguson <[email protected]>

* add yudixie_resnet18_240719_1 to models (#1070)

Co-authored-by: AutoJenkins <[email protected]>

* add yudixie_resnet18_240719_0 to models (#1069)

Co-authored-by: AutoJenkins <[email protected]>

* add yudixie_resnet18_240719_2 to models (#1071)

Co-authored-by: AutoJenkins <[email protected]>

* add yudixie_resnet18_240719_10 to models (#1079)

Co-authored-by: AutoJenkins <[email protected]>

* Add cv_18_dagger_408_pretrained (#1104)

* Add model files

* Adjust timm version

---------

Co-authored-by: Ethan Pellegrini <[email protected]>

* add eBarlow_lmda_02_200_full to models (#1121)

Co-authored-by: AutoJenkins <[email protected]>

* remove old tutorials in favor of new link (#1170)

---------

Co-authored-by: Katherine Fairchild <[email protected]>
Co-authored-by: AutoJenkins <[email protected]>
Co-authored-by: Michael Ferguson <[email protected]>
Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: Linus Sommer <[email protected]>
Co-authored-by: deirdre-k <[email protected]>
Co-authored-by: Kartik Pradeepan <[email protected]>
Co-authored-by: pellegreene <[email protected]>
Co-authored-by: Ethan Pellegrini <[email protected]>

* environment lock for 2.1.0

* Rename environment.yml to environment_lock.yml

* add test dependencies and move certain dependencies to pip

* remove branch from core dependency

* new env lock with all dependencies of env (including test)

* add informative comment to env lock

* Update .travis.yml

* point to 3.11 branches

* update pointers to 3.11 branches

* add back check for forks in travis

* remove f string from full_name variable

* remove if/else that enabled tf

* remove folder_name for models that were moved to correct directory

* version less specific (2.1.0 to 2.1)

* remove protobuf

* remove python specification in setup.pys

* Update mismatched s3 folder name

* Update environment_lock.yml w/ main branches

* update branch pointers to main

---------

Co-authored-by: Katherine Fairchild <[email protected]>
Co-authored-by: AutoJenkins <[email protected]>
Co-authored-by: Michael Ferguson <[email protected]>
Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: Linus Sommer <[email protected]>
Co-authored-by: deirdre-k <[email protected]>
Co-authored-by: Kartik Pradeepan <[email protected]>
Co-authored-by: Deirdre Kelliher <[email protected]>
Co-authored-by: pellegreene <[email protected]>
Co-authored-by: Ethan Pellegrini <[email protected]>

---------

Co-authored-by: David Coggan <[email protected]>
Co-authored-by: ddcoggan <[email protected]>
Co-authored-by: YingtianDt <[email protected]>
Co-authored-by: Yingtian Tang <[email protected]>
Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: Martin Schrimpf <[email protected]>
Co-authored-by: deirdre-k <[email protected]>
Co-authored-by: Michael Ferguson <[email protected]>
Co-authored-by: Sam Winebrake <[email protected]>
Co-authored-by: Katherine Fairchild <[email protected]>
Co-authored-by: AutoJenkins <[email protected]>
Co-authored-by: Linus Sommer <[email protected]>
Co-authored-by: Deirdre Kelliher <[email protected]>
Co-authored-by: pellegreene <[email protected]>
Co-authored-by: Ethan Pellegrini <[email protected]>